To join in the fun, on ArM5 p.79:
Imaginem spells affect the process by which species are produced, rather than the species themselves.
Thus, anyone saying that "destroyed species can't be detected because they where destroyed, there's nothing to detect" isn't quite grasping it.
The Discerning Eye doesn't care about species, as far as I understand. It cares if there's an illusion caused by a spell (check the guideline).
"Illusion" is an ill-defined term in the book, but nowhere, as far as I managed to check, it says invisibility is not a kind of illusion. It could be construed as it not being (by a reading of Second Sight, the invisibility spells, the InIm spells, etc), but that's not given.
If we classify illusion as "any effect affecting the process by which species are produced", then Perdo (which alters the process to the effect that species are not produced anymore) is an illusion. If we, otherwise, define illusion as "images affected by Creo, Muto or Rego" then, of course, Perdo is automatically excluded. If we define invisibility as "not a type of illusion" than Perdo is also excluded.
There's no particular reason, however, to classify a PeIm effect as invisibility, but a MuIm effect that shrinks the image of the target until it's the size of a grain of sand as not-invisibility. Invisibility is a descriptive thing (what I can't see is, by definition, invisible) not a normative thing (only such and such are trully invisible).
It's also key to dissociate "created or altered through a spell" in the description of Discern the Images of Truth and Falsehood and The Discerning Eye from "created through Creo or altered through Muto or Rego", which is what a few people are reading. Otherwise you have already made your judgement, and your arguments are just seeking to support that.
In previous discussions in this forum I have been on the camp that The Discerning Eye could not detect Perdo invisibility, but after temprobe's first post and detailed consideration I found my previous arguments failling to support my previous position. It's not that The Discerning Eye or DtIoTaF surely see through PeIm effects. It's just that there's no real reason for which they shouldn't be able to, as far as I can see (pun not intended).